Helena Galhardas, Erhard Rahm's Data Integration in the Life Sciences: 10th International PDF

By Helena Galhardas, Erhard Rahm

ISBN-10: 3319085891

ISBN-13: 9783319085890

ISBN-10: 3319085905

ISBN-13: 9783319085906

This publication constitutes the refereed complaints of the tenth overseas convention on information Integration within the existence Sciences, DILS 2014, held in Lisbon, Portugal, in July 2014. The nine revised complete papers and the five brief papers incorporated during this quantity have been rigorously reviewed and chosen from 20 submissions. The papers conceal various very important subject matters similar to facts integration structures and functions; biodiversity facts administration; ontologies and visualization; associated information and question processing.

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Read Online or Download Data Integration in the Life Sciences: 10th International Conference, DILS 2014, Lisbon, Portugal, July 17-18, 2014. Proceedings PDF

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Extra info for Data Integration in the Life Sciences: 10th International Conference, DILS 2014, Lisbon, Portugal, July 17-18, 2014. Proceedings

Example text

This is done by searching for some subset of the literals in the bottom clause that has the ”best” evaluation score. – The clause with the best score is added as a rule to the current theory, and all examples made redundant are removed. Return to Step 1. Several parameters can be set for tuning the theory construction. For instance, the rule evaluation function can be chosen and the default one is based on the difference between the number of covered positive examples and the number of covered negative examples.

Interesting rules are combining protein bp and protein mf predicates such as rule 16 in the G4 theory: is responsible (A) :- gene protein(A, B), protein mf(B, C), subClass(C, ‘ion binding’), protein bp(B, ‘carbohydrate metabolic process’). Such rules suggest that the descriptive power of the theories increases when domain knowledge is taken into account. The value of adding generalization can be illustrated on rules having subClass terms concerning ‘organonitrogen compound metabolism’. Rules 3 from G1 and 7 from G2 theories both contain the subClass(C, ‘organonitrogen compound metabolic process’) term and each of them covers 23 positive examples.

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Data Integration in the Life Sciences: 10th International Conference, DILS 2014, Lisbon, Portugal, July 17-18, 2014. Proceedings by Helena Galhardas, Erhard Rahm

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